Lineage Diversification Rates Research Articles

Dispersal sweepstakes: Biotic interchange propelled air‐breathing fishes across the globe

AbstractAimBiotic interchanges between Africa, India, and Eurasia are central to explaining the present‐day distribution and diversity of freshwater organisms across these landmasses. Synbranchiformes is a diverse and species‐rich clade of freshwater acanthomorph fishes found on all southern continents except Antarctica, and include eel‐ and perch‐like, air‐breathing and non‐air‐breathing fishes. Lacking a comprehensive and resolved phylogeny of the entire clade, contemporary interpretations of synbranchiform biogeography invoke scenarios as disparate as Gondwanan vicariance and pan‐global rafting to explain their modern‐day distribution. Here, we study their biogeographic history of continental dispersal events and test whether these are associated with increases in lineage diversification.LocationAsia, India, Africa freshwater habitats.TaxonSynbranchiformes (gouramis, snakeheads, swamp eels, and relatives).MethodsWe used nearly 1000 ultra‐conserved elements (UCEs) and Sanger‐sequenced genes to infer a phylogeny with representatives of all major synbranchiform lineages and nearly two‐thirds of its known species diversity. Incorporating fossil calibrations, we inferred a time‐calibrated phylogeny to which we apply Bayesian methods of ancestral area reconstruction and test for diversification rate shifts.ResultsAnalyses of UCE data provide a resolved phylogeny for major synbranchiform lineages. Divergence times support a most recent common ancestor of the entire clade approximately 79.2 million years ago. We infer significant increases in lineage diversification in both the spiny eels (Mastacembelidae) and the genus Betta (Osphronemidae).Main ConclusionsOur results reject the hypothesis of Gondwanan vicariance explaining synbranchiform biogeography. Instead, our analyses reconstruct a southeast Asian origin of the entire clade and independent dispersal events to other continents by snakeheads, anabantids, and spiny eels, with no signal of elevated lineage diversification occurring after these invasions. Higher lineage diversification rates in spiny eels pre‐date their arrival to Africa, while the high diversification rates observed in Betta were initiated prior to the flooding of insular Sundaland in southeast Asia.

Climbing mechanisms and the diversification of neotropical climbing plants across time and space.

Climbers germinate on the ground but need external support to sustain their stems, which are maintained attached to supports through modified organs, that is, climbing mechanisms. Specialized climbing mechanisms have been linked to higher diversification rates. Also, different mechanisms may have different support diameter restrictions, which might influence climbers' spatial distribution. We test these assumptions by linking climbing mechanisms to the spatiotemporal diversification of neotropical climbers. A dataset of climbing mechanisms is presented for 9071 species. WCVP was used to standardize species names, map geographical distributions, and estimate diversification rates of lineages with different mechanisms. Twiners appear concentrated in the Dry Diagonal of South America and climbers with adhesive roots in the Chocó region and Central America. However, climbing mechanisms do not significantly influence the distribution of neotropical climbers. Also, we found no strong support for correlations between specialized climbing mechanisms and higher diversification rates. Climbing mechanisms do not strongly impact the spatiotemporal diversification of neotropical climbers on a macroevolutionary scale. We argue that the climbing habit is a synnovation, meaning the spatiotemporal diversification it promotes is due to the sum effect of all the habit's traits rather than isolated traits, such as climbing mechanisms.

Climate Cycles, Habitat Stability, and Lineage Diversification in an African Biodiversity Hotspot

The Eastern Arc Mountains of Tanzania and Kenya, a montane archipelago of 13 uplifted fault blocks (sky islands) isolated by lowland arid savanna, are a center of exceptional biological endemism. Under the influence of humid winds from the Indian Ocean, forests and associated species may have persisted in this region since the final uplift of these blocks in the late Miocene. Today, these mountains are inhabited by a remarkable diversity of bird species. To better understand the evolutionary processes behind this diversity, we combined molecular phylogenetic studies of East African montane birds with paleoclimate modeling of its montane forests. Across its largest lowland barrier, the 125 km between the Usambara and Nguru/Nguu Mountains, 10 of the 14 bird lineages exhibited a phylogeographic break. Using Bayesian methods, we established that at least three periods of forest contraction and expansion affected the diversification of Eastern Arc birds. Habitat distribution models suggest that lower-elevation hills may have acted as stepping-stones connecting isolated highlands to allow for the dispersal of montane forest-dependent species across them. Periods of vicariance during paleoclimatic cycles extending back through the Last Glacial Maximum would have then isolated these populations within the highlands they had reached. The broad distribution of neoendemic species across the mountains of East Africa provides evidence of climate cycling as a driver of lineage diversification. The high incidence of narrow-range endemism of paleoendemic species on the Usambara, Uluguru, and Udzungwa Mountains of this region is harder to explain. Our paleoclimate models retrodicted the persistence of montane forest during climate cycles on several Eastern Arc sky islands but not on the Southern Tanzania Volcanic Highlands. Consistent with recent theoretical work, different rates of local extinction rather than increased rates of lineage diversification may explain the pattern of excessive narrow-range endemism on some sky islands over others. Thus, a regional filtering effect is generated, with paleoendemics maintaining populations through time only in areas where habitat persisted, providing a credible explanation for the dramatic variance in levels of endemism among different East African sky islands.

Allopatric speciation, niche conservatism and gradual phenotypic change in the evolution of European green lizards

AbstractAimThe contributions of historical biogeography, morphology and climatic niche evolution in shaping species diversification have been typically examined separately. To fill this gap, we assessed the relative role of geologic history, environment and phenotypic trait evolution in lineage diversification of green lizards in the Mediterranean biodiversity hotspot.LocationEurasia and North Africa.TaxonGreen lizards (genera Timon and Lacerta).MethodsFor all green lizard lineages, we characterized distributional ranges and external morphological traits across discrete biogeographical areas, occupied macro‐habitats and climatic niches using environmental variables that represent average and extreme climatic conditions. To assess the contribution of geographical factors in shaping diversity patterns, we evaluated the fit of 24 biogeographical models. We used BAMM and estimated phylogenetic signal to assess the rates of lineage diversification and of phenotypic and climatic niche evolution, and to determine whether these processes occurred steadily or at specific time periods as a response to palaeogeological or palaeoclimatic events. Finally, we tested for associations between phenotypic traits and lineage diversification using trait‐dependent diversification analyses (QuaSSE, ES‐sim and STRAPP).ResultsBiogeographical analyses favoured a dispersal–vicariance model explaining speciation patterns in green lizards, including jump dispersal and constrained dispersal by geographical distance. Lineages accumulated gradually towards the present, with minor divergence in morphological traits and conservatism of climatic niches. In contrast, in the Lacerta agilis lineage, niche evolution may have allowed expansion towards colder environments. Morphological and climatic niche evolution were uncoupled from diversification rates.Main ConclusionsBiogeographical processes largely explain the constant lineage diversification of green lizards in the Mediterranean Basin since the Miocene, followed by gradual phenotypic divergence unrelated to cladogenesis. Climatic niche conservatism promoted the accumulation of lineages within the Mediterranean, except for L. agilis, where climatic niche evolution might underpin its range spread towards higher latitudes.

Revisiting trends in morphology of antennal sensilla in scarabaeoid beetles

Phytophagous scarab beetles associated with angiosperms have characteristically enlarged lamellate antennae and exhibit a striking morphological variation of sensilla. In this study, we compared the morphology of antennal surface of 62 species Scarabaeoidea using SEM microscopy, particularly also in light of their evolution in association with angiosperms. We investigated the correlation of antennal sensilla morphology, i.e., their structure and distribution, with species diversity and lineage diversification rates. A high diversity of sensilla was observed but also multiple transitional forms, even on the same antennomere. We interpreted this as evidence for a high evolutionary plasticity. We recognized clear patterns of convergence and repeated evolution of certain types of placoid sensilla. One main tendency found in the phytophagous Pleurostict chafers was a shift from sensilla trichodea to placoid-like sensilla, apparently also enhanced by the increase of the lamellate antennal surface, either by size or number of the lamellae. This trend occurred not only in the Pleurosticts, but also in Glaphyridae, a second angiosperm-associated lineage of Scarabaeoidea. However, our results suggest no direct relation between species diversity or the rate of diversification and general sensilla morphology, i.e., the origin of placoid sensilla. This could be explained not only by species-poor lineages also possessing placoid sensilla but also by otherwise successful and species rich groups having sensilla trichodea (e.g., dung beetles). Results further reveal the need to refine current phylogenetic hypotheses by more comprehensive taxon sampling and to expand the molecular characterization of pheromones and odor binding proteins to better understand the role of chemical communication in scarab diversification.

Time for speciation and niche conservatism explain the latitudinal diversity gradient in clupeiform fishes

AbstractAimThe latitudinal diversity gradient of increasing species richness from poles to equator is one of the most striking and pervasive spatial patterns of biodiversity. Climate appears to have been key to the formation of the latitudinal diversity gradient, but the processes through which climate shaped species richness remain unclear. We tested predictions of the time for speciation, carrying capacity and diversification rate latitudinal diversity gradient hypotheses in a trans‐marine/freshwater clade of fishes.LocationGlobal in marine and freshwater environments.TaxonClupeiformes (anchovies, herrings, sardines and relatives).MethodsWe tested predictions of latitudinal diversity gradient hypotheses using a molecular phylogeny, species distribution data and phylogenetic comparative approaches. To test the time for speciation hypothesis, we conducted ancestral state reconstructions to infer the ages of temperate, subtropical and tropical lineages and frequency of evolutionary transitions between climates. We tested the carry capacity hypothesis by characterizing changes in net diversification rates through time. To test the diversification rate hypothesis, we qualitatively compared the diversification rates of temperate, subtropical and tropical lineages and conducted statistical tests for associations between latitude and diversification rates.ResultsWe identified four transitions to temperate climates and two transitions out of temperate climates. We found no differences in diversification rates among temperate and tropical clupeiforms. Net diversification rates remained positive in crown Clupeiformes since their origin ~150 Ma in both tropical and temperate lineages. Climate niche characters exhibited strong phylogenetic signal. All temperate clupeiform lineages arose <50 Ma, after the Early Eocene Climatic Optimum.Main conclusionsOur results support the time for speciation hypothesis, which proposes that climate niche conservatism and fluctuations in the extent of temperate climates limited the time for species to accumulate in temperate climates, resulting in the latitudinal diversity gradient. We found no support for the carrying capacity or diversification rate hypotheses.

The Amazon‐Orinoco Barrier as a driver of reef‐fish speciation in the Western Atlantic through time

AbstractAimThe Amazon‐Orinoco plume is the major biogeographical barrier between the Great Caribbean and the Brazilian Province. No study has so far addressed the influence of this barrier in a broad chrono‐phylogenetic context. Here, we evaluate the effects of the Amazon‐Orinoco plume barrier on the patterns of diversification of Western Atlantic reef fishes through time.LocationTropical Western Atlantic.TaxonReef Fishes (Percomorpha).MethodsWe compiled DNA sequence data of 21 molecular markers from sister species/population pairs across 33 reef‐fish families in the Greater Caribbean biogeographical region and the Brazilian Province. The data included estimated divergence times between sister‐pairs based on previously published phylogenies and 94 newly proposed time‐trees. Divergence dates were compared with variations in the sedimentation discharge rate of the Amazon River and sea‐level fluctuations. To address the hypothesis that fishes with different adult sizes are affected differently by the Amazon‐Orinoco plume, we used a phylogenetic least squares regression to test the relationship between maximum total body length and divergence times between the Caribbean and Brazilian sister‐pairs.ResultsWe identified an increase in the rates of lineage diversification between sister‐pairs of the Greater Caribbean and Brazilian Province reef fishes in the past 2.4 million years, in accordance with the period of higher sedimentation rates of the Amazon River and the more frequent sea‐level fluctuations in the Pleistocene. A strong relationship between total body length and effectiveness of the barrier through time was confirmed, with smaller species typically diverging earlier in periods when sedimentation rates of the Amazon River were significantly lower.ConclusionsThe strong biogeographical signal detected in this study across different lineages of reef fishes clearly indicates that the Amazon‐Orinoco plume played a significant role in the diversification of the Atlantic reef‐fish fauna. The temporal pattern of diversifications indicates a correlation between the permeability of the plume, sea‐level fluctuations, variability in the volume of the discharge and fish body size, with the barrier's influence being weaker on larger fishes.

Causes and Consequences of Apparent Timescaling Across All Estimated Evolutionary Rates

Evolutionary rates play a central role in connecting micro- and macroevolution. All evolutionary rate estimates, including rates of molecular evolution, trait evolution, and lineage diversification, share a similar scaling pattern with time: The highest rates are those measured over the shortest time interval. This creates a disconnect between micro- and macroevolution, although the pattern is the opposite of what some might expect: Patterns of change over short timescales predict that evolution has tremendous potential to create variation and that potential is barely tapped by macroevolution. In this review, we discuss this shared scaling pattern across evolutionary rates. We break down possible explanations for scaling into two categories, estimation error and model misspecification, and discuss how both apply to each type of rate. We also discuss the consequences of this ubiquitous pattern, which can lead to unexpected results when comparing ratesover different timescales. Finally, after addressing purely statistical concerns, we explore a few possibilities for a shared unifying explanation across the three types of rates that results from a failure to fully understand and account for how biological processes scale over time.

Ecological interactions shape the evolution of flower color in communities across a temperate biodiversity hotspot.

Processes driving the divergence of floral traits may be integral to the extraordinary richness of flowering plants and the assembly of diverse plant communities. Several models of pollinator‐mediated floral evolution have been proposed; floral divergence may (i) be directly involved in driving speciation or may occur after speciation driven by (ii) drift or local adaptation in allopatry or (iii) negative interactions between species in sympatry. Here, we generate predictions for patterns of trait divergence and community assembly expected under these three models, and test these predictions in Hakea (Proteaceae), a diverse genus in the Southwest Australian biodiversity hotspot. We quantified functional richness for two key floral traits (pistil length and flower color), as well as phylogenetic distances between species, across ecological communities, and compared these to patterns generated from null models of community assembly. We also estimated the statistical relationship between rates of trait evolution and lineage diversification across the phylogeny. Patterns of community assembly suggest that flower color, but not floral phenology or morphology, or phylogenetic relatedness, is more divergent in communities than expected. Rates of lineage diversification and flower color evolution were negatively correlated across the phylogeny and rates of flower colour evolution were positively related to branching times. These results support a role for diversity‐dependent species interactions driving floral divergence during the Hakea radiation, contributing to the development of the extraordinary species richness of southwest Australia.

Accelerated Brain Shape Evolution Is Associated with Rapid Diversification in an Avian Radiation.

AbstractNiche expansion is a critical step in the speciation process. Large brains linked to improved cognitive ability may enable species to expand their niches and forage in new ways, thereby promoting speciation. Despite considerable work on ecological divergence in brain size and its importance in speciation, relatively little is known about how brain shape relates to behavioral, ecological, and taxonomic diversity at macroevolutionary scales. This is due in part to inherent challenges with quantifying brain shape across many species. Here we present a novel, semiautomated approach for rapidly phenotyping brain shape using semilandmarks derived from X-ray computed microtomography scans. We then test its utility by parsing evolutionary trends within a diverse radiation of birds: kingfishers (Aves: Alcedinidae). Multivariate comparative analyses reveal that rates of brain shape evolution (but not beak shape) are positively correlated with lineage diversification rates. Distinct brain shapes are further associated with changes in body size and foraging behavior, suggesting both allometric and ecological constraints on brain shape evolution. These results are in line with the idea of brains acting as a "master regulator" of critical processes governing speciation, such as dispersal, foraging behavior, and dietary niche.

Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

With ∼36,000 described species, Agaricomycetes are among the most successful groups of Fungi. Agaricomycetes display great diversity in fruiting body forms and nutritional modes. Most have pileate-stipitate fruiting bodies (with a cap and stalk), but the group also contains crust-like resupinate fungi, polypores, coral fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some Agaricomycetes enter into ectomycorrhizal symbioses with plants, while others are decayers (saprotrophs) or pathogens. We constructed a megaphylogeny of 8,400 species and used it to test the following five hypotheses regarding the evolution of morphological and ecological traits in Agaricomycetes and their impact on diversification: 1) resupinate forms are plesiomorphic, 2) pileate-stipitate forms promote diversification, 3) the evolution of gasteroid forms is irreversible, 4) the ectomycorrhizal (ECM) symbiosis promotes diversification, and 5) the evolution of ECM symbiosis is irreversible. The ancestor of Agaricomycetes was a saprotroph with a resupinate fruiting body. There have been 462 transitions in the examined morphologies, including 123 origins of gasteroid forms. Reversals of gasteroid forms are highly unlikely but cannot be rejected. Pileate-stipitate forms are correlated with elevated diversification rates, suggesting that this morphological trait is a key to the success of Agaricomycetes. ECM symbioses have evolved 36 times in Agaricomycetes, with several transformations to parasitism. Across the entire 8,400-species phylogeny, diversification rates of ectomycorrhizal lineages are no greater than those of saprotrophic lineages. However, some ECM lineages have elevated diversification rates compared to their non-ECM sister clades, suggesting that the evolution of symbioses may act as a key innovation at local phylogenetic scales.

Peripheral eco‐morphology predicts restricted lineage diversification and endemism among corvoid passerine birds

AbstractAimAcross a variety of taxonomic scales, species diversity is unevenly distributed among its constituent units, and clades with few species are more common than expected assuming homogeneous rates of speciation and extinction among lineages. In order to explain the prevalence of species‐poor families among a global and species‐rich radiation of passerine birds, we test whether these groups share common eco‐morphological, geographical and phylogenetic attributes.LocationGlobal.Time periodLate Oligocene to the present day.Major taxa studiedThe Corvides (c. 790 species).MethodsWe obtained 10 linear measurements of external morphology for 782 species of corvoid passerines. Using these measurements as a proxy for species ecology, we assessed the positioning of corvoid families in eco‐morphological trait space and how these factors were associated with their species richness and rates of lineage diversification. Subsequently, we compared these same characteristics (species richness, morphological positioning and rates of lineage diversification) between families that are currently endemic to the Australasian ancestral area of the Corvides with those that have dispersed and diversified throughout other continental and insular landmasses.ResultsFamilies with low species richness and rates of diversification tend to occupy the most peripheral positions in eco‐morphological trait space, with almost all of these groups being endemic to Australasia. The peripheral eco‐morphological positioning of the Australasian groupings is generally greater than expected upon accounting for differences in phylogenetic isolation and heterogeneity in rates of trait evolution, implying that species‐poor corvoid families repeatedly evolved towards marginal areas of morphospace.Main conclusionsThe over‐representation of species‐poor clades across diverse sets of organismal groups is consistent with their evolution towards, and the maintenance in, marginal areas of ecological niche space. The evolution of peripheral eco‐morphological characters represents a potentially significant limit to rates of range expansion and lineage diversification.

The contribution of the edaphic factor as a driver of recent plant diversification in a Mediterranean biodiversity hotspot

Abstract The high diversification rates of plant lineages in the Mediterranean Basin hotspot have been linked to a complex interaction of climatic stressors, geographic isolation and soil type, but the question remains as to which of these factors has been the most significant environmental driver of recent speciation. Here, we draw on distributional data for the entire endemic flora of the Iberian Peninsula, together with DNA‐based phylogenies and spatial phylogenetic methods, to explore the patterns of relative phylogenetic endemism at different spatial resolutions and phylogenetic scales (superclades) and assess how environmental factors contribute to explain these patterns. We found that recent diversification of angiosperms as a whole, and particularly of eudicots, has been boosted by environmental stressors including high values of soil pH and dry‐seasonal climatic conditions, while diversification of monocots has not been associated with soil conditions but with high elevation and less seasonal climate. Synthesis. These results provide robust insights into the environmental factors driving recent plant diversification in the Mediterranean Basin, including a role of soil properties that had not been quantified before. The contrasting environmental drivers of diversification in eudicots and monocots highlight the importance of analysing spatial phylogenetic patterns at multiple phylogenetic scales to get a better understanding of the processes that shape biodiversity.

Comparing Rates of Linage Diversification with Rates of Size and Shape Evolution in Catarrhine Crania

Many authors have hypothesized an association between rates of morphological evolution and rates of species diversification, however, this association has yet to be empirically tested in the primate cranium. In this investigation, we used phylogeny-based approaches to examine the relationship between rates of species diversification, rates of cranial size and shape evolution, and observed cranial morphological disparity of extant catarrhines (Order: Primates). We used 34 3D landmarks digitized from 2038 crania representing 42 catarrhine species and a time-calibrated molecular phylogeny to determine the rates of evolution of cranial size and shape, rates of lineage diversification, and levels of morphological disparity by clade. The only significant relationship among these variables was for evolutionary rates of size and shape change. We discuss these results in the context of primate and mammalian macroevolution, and in light of the proposed hypothesis that size is a “line of least evolutionary resistance” in cranial evolution.

Genomic landscape of the global oak phylogeny.

The tree of life is highly reticulate, with the history of population divergence emerging from populations of gene phylogenies that reflect histories of introgression, lineage sorting and divergence. In this study, we investigate global patterns of oak diversity and test the hypothesis that there are regions of the oak genome that are broadly informative about phylogeny. We utilize fossil data and restriction-site associated DNA sequencing (RAD-seq) for 632 individuals representing nearly 250 Quercus species to infer a time-calibrated phylogeny of the world's oaks. We use a reversible-jump Markov chain Monte Carlo method to reconstruct shifts in lineage diversification rates, accounting for among-clade sampling biases. We then map the >20000 RAD-seq loci back to an annotated oak genome and investigate genomic distribution of introgression and phylogenetic support across the phylogeny. Oak lineages have diversified among geographic regions, followed by ecological divergence within regions, in the Americas and Eurasia. Roughly 60% of oak diversity traces back to four clades that experienced increases in net diversification, probably in response to climatic transitions or ecological opportunity. The strong support for the phylogeny contrasts with high genomic heterogeneity in phylogenetic signal and introgression. Oaks are phylogenomic mosaics, and their diversity may in fact depend on the gene flow that shapes the oak genome.

Do latex and resin canals spur plant diversification? Re‐examining a classic example of escape and radiate coevolution

Abstract The association between increased lineage diversification rates and the evolution of latex and resin canals is widely cited as a paradigmatic example of Ehrlich and Raven’s ‘escape‐and‐radiate’ hypothesis of co‐evolution. However, it has been over a quarter‐century since the original study, and updates to phylogenetic comparative methods, plant molecular systematics, and phenotypic data warrant a reassessment of this classic finding. We gathered data on latex and resin canals across 345 families and 986 genera of vascular plants and conducted a multi‐scale test of the association between these traits and lineage diversification rates. At a broad scale (across clades), we used sister‐clade comparisons to test whether 28 canal‐bearing clades had higher net diversification rates than their canal‐lacking sister clades. At a finer scale (within clades), we used ancestral state reconstructions and phylogenetic models of lineage diversification rates to examine the relationship between trait evolution and the timing of diversification rate shifts in two better‐characterized clades – Araceae and Papaveraceae. At both scales of our analyses we found poor support for the predicted relationship between diversification and the evolution of latex and resin canals. Follow‐up analyses clarified that the qualitative change between our results and those of the Farrell et al.’s classic study is not the result of different phylogenetic comparative methods. Instead, the differences are attributable to updates to plant systematic hypotheses and new data on laticifers and resin canal presence/absence. Synthesis. Our updated study reveals that there is no longer strong evidence for latex or resin canals as general, consistently replicable drivers of species diversity across plants. However, we cannot rule out a relationship in all groups. We therefore argue that theoretical and empirical work aimed at understanding ecological factors that condition ‘escape‐and‐radiate’ dynamics will allow for more nuanced tests of the hypothesis in the future.

Productivity begets less phylogenetic diversity but higher uniqueness than expected

AbstractAimThe positive effect of primary productivity on animal species richness is one of the most conspicuous ecological features on Earth. However, less is known about the relationship between ecosystems primary productivity and the evolutionary history of biota. Here, we analyse how global primary productivity relates to the phylogenetic structure of vertebrate assemblages, and to the distribution of the most distinct lineages and recently diversified clades.LocationGlobal.TaxonAmphibians, birds and mammals.MethodsWe calculated relative phylogenetic diversity (i.e. phylogenetic diversity corrected for species richness), standardized effect size of the richness of top 25% evolutionary distinct species and of top 25% species‐level lineage diversification rates. We related these three metrics to mean net primary productivity (NPP) at the global scale, and for each zoogeographic region. We also tested the influence of the spatial scaling of species pool on the overall analyses (global, hemispheric and zoogeographic regions‐based species pools).ResultsPhylogenetic diversity (corrected for species richness) of the three taxa decreases with NPP (in contrast with species richness) and varies considerably in space. High productivity sites harbour more closely related species than low productivity sites consistently across zoogeographic zones. However, the phylogenetically most distinct species are also found in high productivity sites, while the top most rapidly diversifying lineages are found in the least productive sites. Modifying the spatial extent of the species pool did not affect the results much.ConclusionsBenign conditions in high productivity sites (a) result in denser niche packing and thus allow for the coexistence of many closely‐related species and (b) protect the persistence of evolutionary distinct species. Low productivity sites may harbour fewer, more distinct and temporarily more variable niches that allow maintenance of unique lineages for longer periods of time.

Rates of niche and phenotype evolution lag behind diversification in a temperate radiation

Environmental change can create opportunities for increased rates of lineage diversification, but continued species accumulation has been hypothesized to lead to slowdowns via competitive exclusion and niche partitioning. Such density-dependent models imply tight linkages between diversification and trait evolution, but there are plausible alternative models. Little is known about the association between diversification and key ecological and phenotypic traits at broad phylogenetic and spatial scales. Do trait evolutionary rates coincide with rates of diversification, are there lags among these rates, or is diversification niche-neutral? To address these questions, we combine a deeply sampled phylogeny for a major flowering plant clade-Saxifragales-with phenotype and niche data to examine temporal patterns of evolutionary rates. The considerable phenotypic and habitat diversity of Saxifragales is greatest in temperate biomes. Global expansion of these habitats since the mid-Miocene provided ecological opportunities that, with density-dependent adaptive radiation, should result in simultaneous rate increases for diversification, niche, and phenotype, followed by decreases with habitat saturation. Instead, we find that these rates have significantly different timings, with increases in diversification occurring at the mid-Miocene Climatic Optimum (∼15 Mya), followed by increases in niche and phenotypic evolutionary rates by ∼5 Mya; all rates increase exponentially to the present. We attribute this surprising lack of temporal coincidence to initial niche-neutral diversification followed by ecological and phenotypic divergence coincident with more extreme cold and dry habitats that proliferated into the Pleistocene. A lack of density-dependence contrasts with investigations of other cosmopolitan lineages, suggesting alternative patterns may be common in the diversification of temperate lineages.

Sexual selection, body mass and molecular evolution interact to predict diversification in birds.

Sexual selection is a powerful agent of evolution, driving microevolutionary changes in the genome and macroevolutionary rates of lineage diversification. The mechanisms by which sexual selection might influence macroevolution remain poorly understood. For example, sexual selection might drive positive selection for key adaptations that facilitate diversification. Furthermore, sexual selection might be a general driver of molecular evolutionary rate. We lay out some of the potential mechanisms that create a link between sexual selection and diversification, based on causal effects on other life-history traits such as body mass and the rate of molecular evolution. Birds are ideally suited for testing the importance of these relationships because of their diverse reproductive systems and the multiple evolutionary radiations that have produced their astounding modern diversity. We show that sexual selection (measured as the degree of polygyny) interacts with the rate of molecular evolution and with body mass to predict species richness at the genus level. A high degree of polygyny and rapid molecular evolution are positively associated with the net rate of diversification, with the two factors being especially important for explaining diversification in large-bodied taxa. Our findings further suggest that mutation rates underpin some of the macroevolutionary effects of sexual selection. We synthesize the existing theory on sexual selection as a force for diversity and propose avenues for exploring this association using genome data.

Megaphylogeny resolves global patterns of mushroom evolution

Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.